3E9C Hydrolase date Aug 21, 2008
title Structure Of A Tryptic Core Fragment Of Tigar From Danio Rer
authors H.Li, G.Jogl
compound source
Molecule: Zgc:56074
Chain: A, B
Fragment: Tryptic Core Fragment
Engineered: Yes
Organism_scientific: Danio Rerio
Organism_common: Leopard Danio,Zebra Danio,Zebra Fish
Organism_taxid: 7955
Gene: Zgc:56074
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 65
R_factor 0.170 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.672 136.672 66.753 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bisphosphoglycerate 2-phosph...
  • fructose-2,6-bisphosphate 2-...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3e9c.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3e9c.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3E9C
  • CSU: Contacts of Structural Units for 3E9C
  • Likely Quarternary Molecular Structure file(s) for 3E9C
  • Structure Factors (683 Kb)
  • Retrieve 3E9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E9C from S2C, [Save to disk]
  • Re-refined 3e9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E9C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E9C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e9c_B] [3e9c] [3e9c_A]
  • SWISS-PROT database: [Q7ZVE3]
  • Domain organization of [TIGRB_DANRE] by SWISSPFAM
  • Domain found in 3E9C: [PGAM ] by SMART
  • Other resources with information on 3E9C
  • Community annotation for 3E9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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