3EDL Structural Protein date Sep 03, 2008
title Kinesin13-Microtubule Ring Complex
authors D.Tan, W.J.Rice, H.Sosa
compound source
Molecule: Tubulin Alpha-1a Chain
Chain: A
Synonym: Alpha-Tubulin 1,Tubulin Alpha-1 Chain
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Brain

Molecule: Beta Tubulin
Chain: B, G

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Brain

Molecule: Kinesin-Like Protein Kif2c
Chain: D
Synonym: Mitotic Centromere-Associated Kinesin,Mcak
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227
Gene: Dmklp10a
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset B

Molecule: Tubulin Alpha-1a Chain
Chain: F
Synonym: Alpha-Tubulin 1,Tubulin Alpha-1 Chain

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Brain
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 28.00 Å
ligand ANP, CN2, GDP, GTP, MG, TA1, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


D


F


G, B


Primary referenceStructure of the kinesin13-microtubule ring complex., Tan D, Rice WJ, Sosa H, Structure. 2008 Nov 12;16(11):1732-9. PMID:19000825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk]
  • Biological Unit Coordinates (3edl.pdb1.gz) 9729 Kb
  • LPC: Ligand-Protein Contacts for 3EDL
  • CSU: Contacts of Structural Units for 3EDL
  • Likely Quarternary Molecular Structure file(s) for 3EDL
  • Retrieve 3EDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EDL from S2C, [Save to disk]
  • View 3EDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EDL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EDL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3edl] [3edl_G] [3edl_F] [3edl_D] [3edl_B] [3edl_A]
  • SWISS-PROT database: [P81947]
  • Domain organization of [TBA1B_BOVIN] by SWISSPFAM
  • Domains found in 3EDL: [KISc] [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 3EDL
  • Community annotation for 3EDL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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