3EE2	Isomerase	date	Sep 04, 2008
title	Structure Of Human Prostaglandin D-Synthase (Hgsts1-1) In Co Nocodazole
authors	A.J.Oakley
compound		source
Molecule: Glutathione-Requiring Prostaglandin D Synthase Chain: A, B Synonym: Glutathione-Dependent Pgd Synthetase, Prostaglandi Isomerase, Hematopoietic Prostaglandin D Synthase, H-Pgds; Ec: 5.3.99.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pgds Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet17b
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.220 79.359 107.547 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	GSH, MG, NZO	enzyme	Isomerase E.C.5.3.99.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Identification and characterisation of new inhibitors for the human hematopoietic prostaglandin D(2) synthase., Weber JE, Oakley AJ, Christ AN, Clark AG, Hayes JD, Hall R, Hume DA, Board PG, Smythe ML, Flanagan JU, Eur J Med Chem. 2009 Oct 23. PMID:19939518

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (3ee2.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 3EE2 CSU: Contacts of Structural Units for 3EE2 Likely Quarternary Molecular Structure file(s) for 3EE2 Structure Factors (454 Kb) Retrieve 3EE2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EE2 from S2C, [Save to disk] Re-refined 3ee2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EE2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EE2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EE2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ee2] [3ee2_A] [3ee2_B] SWISS-PROT database: [O60760] Domain organization of [HPGDS_HUMAN] by SWISSPFAM

Other resources with information on 3EE2

Community annotation for 3EE2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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