3ESV Immune System date Oct 06, 2008
title Crystal Structure Of The Engineered Neutralizing Antibody M1
authors A.F.Monzingo, C.E.Leysath, J.Barnett, B.L.Iverson, G.Georgiou, J.D.Robertus
compound source
Molecule: Antibody M18 Light Chain And Antibody M18 Heavy C Linked With A Synthetic (Ggggs)4 Linker;
Chain: F, G
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jude-1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pak400
symmetry Space Group: P 1
R_factor 0.194 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.070 54.210 61.950 71.80 75.58 71.25
method X-Ray Diffractionresolution 2.00 Å
Primary referenceCrystal structure of the engineered neutralizing antibody M18 complexed to domain 4 of the anthrax protective antigen., Leysath CE, Monzingo AF, Maynard JA, Barnett J, Georgiou G, Iverson BL, Robertus JD, J Mol Biol. 2009 Apr 3;387(3):680-93. Epub 2009 Feb 10. PMID:19361425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3esv.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3esv.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3ESV
  • Likely Quarternary Molecular Structure file(s) for 3ESV
  • Structure Factors (204 Kb)
  • Retrieve 3ESV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ESV from S2C, [Save to disk]
  • Re-refined 3esv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ESV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ESV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ESV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3esv] [3esv_F] [3esv_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ESV: [IGv ] by SMART
    • Other resources with information on 3ESV
  • Community annotation for 3ESV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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