3ETL RadA recombinase from Methanococcus maripaludis in complex with AMPPNP date
authors Li, Y., He, Y., Luo, Y.
compound source
symmetry
R_factor
R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConservation of a conformational switch in RadA recombinase from Methanococcus maripaludis., Li Y, He Y, Luo Y, Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):602-10. Epub 2009, May 15. PMID:19465774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3etl.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3ETL
  • CSU: Contacts of Structural Units for 3ETL
  • Likely Quarternary Molecular Structure file(s) for 3ETL
  • Structure Factors (123 Kb)
  • Retrieve 3ETL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ETL from S2C, [Save to disk]
  • Re-refined 3etl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ETL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ETL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ETL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3etl] [3etl_A]
  • SWISS-PROT database: [Q977P5]
  • Domain organization of [RADA_METMP] by SWISSPFAM
  • Domains found in 3ETL: [AAA] [HhH1 ] by SMART
  • Other resources with information on 3ETL
  • Community annotation for 3ETL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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