3EY3 Dna date Oct 17, 2008
title A Conformational Transition In The Structure Of A 2'-Thiomet Modified Dna Visualized At High Resolution
authors M.Egli, P.S.Pallan
compound source
Molecule: 5'-D(Cpgpcpgpapap(Usm)P(Usm)Pcpgpcpg)
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized Modified Dna (Oligonu
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.074 43.218 88.712 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand MPD, SR, USM enzyme
Primary referenceA conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution., Pallan PS, Prakash TP, Li F, Eoff RL, Manoharan M, Egli M, Chem Commun (Camb). 2009 Apr 21;(15):2017-9. Epub 2009 Feb 26. PMID:19333476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3ey3.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3ey3.pdb2.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3EY3
  • CSU: Contacts of Structural Units for 3EY3
  • Likely Quarternary Molecular Structure file(s) for 3EY3
  • Structure Factors (505 Kb)
  • Retrieve 3EY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EY3 from S2C, [Save to disk]
  • Re-refined 3ey3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EY3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EY3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ey3_D] [3ey3_B] [3ey3_A] [3ey3_C] [3ey3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3EY3
  • Community annotation for 3EY3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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