3EYU	Immune System	date	Oct 21, 2008
title	Pfa1 Fab Fragment Complexed With Ror2(518-525)
authors	A.S.Gardberg, C.G.Dealwis
compound		source
Molecule: If Kappa Light Chain Chain: L Synonym: Pfa1 Fab Light Chain Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Igk-C Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_strain: Balb C
Molecule: Pfa1 Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_strain: Balb C
Molecule: Ror2(518-525) Peptide Chain: Q Engineered: Yes		Synthetic: Yes Other_details: The Peptide Is Chemically Synthesized. It Is Identical To Fragment From Homo Sapiens Receptor-Related Neurotrophic Tyrosine Kinase (Ror2).
symmetry	Space Group: P 1	R_factor 0.177 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.632 42.632 58.729 96.09 93.58 91.71
method	X-Ray Diffraction	resolution	2.71 Å
ligand	YCM	enzyme
Gene Ontology	Chain Function Process Component L
Primary reference	THE X-RAY STRUCTURES OF AMYLOID BETA-RELATED PEPTIDES COMPLEXED TO ANTIBODIES., Gardberg AS, Dice L, Pridgen K, Ko J, Patterson P, Ou S, Wetzel R, Dealwis C, Biochemistry. 2009 Apr 22. PMID:19385664

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (3eyu.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 3EYU CSU: Contacts of Structural Units for 3EYU Likely Quarternary Molecular Structure file(s) for 3EYU Structure Factors (142 Kb) Retrieve 3EYU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EYU from S2C, [Save to disk] Re-refined 3eyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EYU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EYU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EYU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eyu_H] [3eyu] [3eyu_L] [3eyu_Q] SWISS-PROT database: [A2NHM3] Domain organization of [A2NHM3_MOUSE] by SWISSPFAM Domains found in 3EYU: [IG_like] [IGv ] by SMART

Other resources with information on 3EYU

Community annotation for 3EYU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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