3EZZ Hydrolase date Oct 24, 2008
title Crystal Structure Of Human Mkp-2
authors D.G.Jeong, S.K.Jung, S.E.Ryu, S.J.Kim
compound source
Molecule: Dual Specificity Protein Phosphatase 4
Chain: A, B, C, D, E, F
Fragment: Catalytic Domain
Synonym: Mitogen-Activated Protein Kinase Phosphatase 2, Ma Phosphatase 2, Mkp-2, Dual Specificity Protein Phosphatase
Ec: 3.1.3.48, 3.1.3.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp4, Mkp2, Vh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: I 4
R_factor 0.219 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.557 141.557 158.532 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of the catalytic domain of human MKP-2 reveals a 24-mer assembly., Jeong DG, Jung SK, Yoon TS, Woo EJ, Kim JH, Park BC, Ryu SE, Kim SJ, Proteins. 2009 Aug 15;76(3):763-7. PMID:19415758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (3ezz.pdb1.gz) 501 Kb
  • LPC: Ligand-Protein Contacts for 3EZZ
  • CSU: Contacts of Structural Units for 3EZZ
  • Structure Factors (281 Kb)
  • Retrieve 3EZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EZZ from S2C, [Save to disk]
  • Re-refined 3ezz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EZZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EZZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ezz_A] [3ezz_E] [3ezz_D] [3ezz] [3ezz_B] [3ezz_F] [3ezz_C]
  • SWISS-PROT database: [Q13115]
  • Domain organization of [DUS4_HUMAN] by SWISSPFAM
  • Domain found in 3EZZ: [DSPc ] by SMART
  • Other resources with information on 3EZZ
  • Community annotation for 3EZZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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