3F27	Transcription Dna	date	Oct 29, 2008
title	Structure Of Sox17 Bound To Dna
authors	P.Palasingam, R.Jauch, C.K.L.Ng, P.R.Kolatkar
compound		source
Molecule: Dna (5'- D(Dgpdtpdcpdtpdcpdtpdapdtpdtpdgpdtpdcpdcpdtp 3'); Chain: A Engineered: Yes Other_details: Lama1		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Dcpdcpdapdgpdgpdapdcpdapdapdtpdapdgpdapdgp 3'); Chain: B Engineered: Yes Other_details: Lama1		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Transcription Factor Sox-17 Chain: D Fragment: Hmg Box, Residues 66-144 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Sox-17, Sox17 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petg20a
symmetry	Space Group: P 32 2 1	R_factor 0.242 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.753 68.753 66.329 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.75 Å
Primary reference	The Structure of Sox17 Bound to DNA Reveals a Conserved Bending Topology but Selective Protein Interaction Platforms., Palasingam P, Jauch R, Ng CK, Kolatkar PR, J Mol Biol. 2009 Mar 25. PMID:19328208

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (3f27.pdb1.gz) 25 Kb CSU: Contacts of Structural Units for 3F27 Likely Quarternary Molecular Structure file(s) for 3F27 Structure Factors (34 Kb) Retrieve 3F27 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F27 from S2C, [Save to disk] Re-refined 3f27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F27 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F27

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F27, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f27_B] [3f27_D] [3f27_A] [3f27] SWISS-PROT database: [Q61473] Domain organization of [SOX17_MOUSE] by SWISSPFAM Domain found in 3F27: [HMG ] by SMART

Other resources with information on 3F27

Community annotation for 3F27 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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