3F6F Transferase date Nov 06, 2008
title Crystal Structure Of Glutathione Transferase Dmgstd10 From D Melanogaster
authors J.Wongsantichon, R.C.Robinson, A.J.Ketterman
compound source
Molecule: Cg18548-Pa (Ip02196p) (Ip02193p)
Chain: A
Synonym: Glutathione Transferase Dmgstd10
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Gstd10, Dmel_cg18548
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 41 2 2
R_factor 0.185 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.649 49.649 195.373 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand
enzyme Transferase E.C.2.5.1.18 BRENDA
Gene DMEL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural evidence for conformational changes of Delta class glutathione transferases after ligand binding., Wongsantichon J, Robinson RC, Ketterman AJ, Arch Biochem Biophys. 2012 May;521(1-2):77-83. doi: 10.1016/j.abb.2012.03.023., Epub 2012 Mar 27. PMID:22475449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3f6f.pdb1.gz) 80 Kb
  • CSU: Contacts of Structural Units for 3F6F
  • Structure Factors (424 Kb)
  • Retrieve 3F6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F6F from S2C, [Save to disk]
  • Re-refined 3f6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F6F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F6F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f6f_A] [3f6f]
  • SWISS-PROT database: [Q9VGA1]
  • Domain organization of [Q9VGA1_DROME] by SWISSPFAM
  • Other resources with information on 3F6F
  • Community annotation for 3F6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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