3F6O Transcription Regulator date Nov 06, 2008
title Crystal Structure Of Arsr Family Transcriptional Regulator,
authors A.Dong, X.Xu, H.Zheng, A.M.Edwards, A.Joachimiak, A.Savchenko, Mid Center For Structural Genomics (Mcsg)
compound source
Molecule: Probable Transcriptional Regulator, Arsr Family P
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodococcus Sp. Rha1
Organism_taxid: 101510
Gene: Rha1_ro06925
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)Derivative
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Derivative
symmetry Space Group: P 32 2 1
R_factor 0.216 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.543 65.543 93.024 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand BR enzyme
Gene RHA1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3f6o.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3f6o.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3F6O
  • CSU: Contacts of Structural Units for 3F6O
  • Likely Quarternary Molecular Structure file(s) for 3F6O
  • Structure Factors (270 Kb)
  • Retrieve 3F6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F6O from S2C, [Save to disk]
  • Re-refined 3f6o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F6O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F6O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f6o_A] [3f6o] [3f6o_B]
  • SWISS-PROT database: [Q0S195]
  • Domain organization of [Q0S195_RHOSR] by SWISSPFAM
  • Domain found in 3F6O: [HTH_ARSR ] by SMART
    • Other resources with information on 3F6O
  • Community annotation for 3F6O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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