3F72 Dna Binding Protein, Gene Regulation date Nov 07, 2008
title Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc Me Binding Site 2 Mutant
authors A.Kandegedara, S.Thiyagarajan, K.C.Kondapalli, T.L.Stemmler, B.P
compound source
Molecule: Cadmium Efflux System Accessory Protein
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.237 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.471 89.471 148.536 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceRole of bound Zn(II) in the CadC Cd(II)/Pb(II)/Zn(II)-responsive repressor., Kandegedara A, Thiyagarajan S, Kondapalli KC, Stemmler TL, Rosen BP, J Biol Chem. 2009 Mar 13. PMID:19286656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3f72.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3f72.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (3f72.pdb3.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3F72
  • CSU: Contacts of Structural Units for 3F72
  • Likely Quarternary Molecular Structure file(s) for 3F72
  • Structure Factors (746 Kb)
  • Retrieve 3F72 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F72 from S2C, [Save to disk]
  • Re-refined 3f72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F72
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F72, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f72] [3f72_F] [3f72_A] [3f72_B] [3f72_E] [3f72_D] [3f72_C]
  • SWISS-PROT database: [P20047]
  • Domain organization of [CADC_STAAU] by SWISSPFAM
  • Domain found in 3F72: [HTH_ARSR ] by SMART
    • Other resources with information on 3F72
  • Community annotation for 3F72 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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