3F8F Transcription Regulator date Nov 12, 2008
title Crystal Structure Of Multidrug Binding Transcriptional Regul Complexed With Daunomycin
authors P.K.Madoori, H.Agustiandari, A.J.M.Driessen, A.M.W.H.Thunnisse
compound source
Molecule: Transcriptional Regulator, Padr-Like Family
Chain: A, B
Synonym: Transcription Regulator Lmrr
Engineered: Yes
Organism_scientific: Lactococcus Lactis Subsp. Cremoris
Organism_taxid: 416870
Strain: Mg1363
Gene: Lmrr
Expression_system: Lactococcus Lactis
Expression_system_taxid: 1358
Expression_system_strain: Nz9000
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnsc8048
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.450 53.025 147.116 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand DM1 enzyme
Primary referenceStructure of the transcriptional regulator LmrR and its mechanism of multidrug recognition., Madoori PK, Agustiandari H, Driessen AJ, Thunnissen AM, EMBO J. 2008 Dec 18. PMID:19096365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3f8f.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3F8F
  • CSU: Contacts of Structural Units for 3F8F
  • Likely Quarternary Molecular Structure file(s) for 3F8F
  • Structure Factors (211 Kb)
  • Retrieve 3F8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F8F from S2C, [Save to disk]
  • Re-refined 3f8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F8F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F8F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f8f_B] [3f8f_A] [3f8f]
  • SWISS-PROT database: [A2RI36]
  • Domain organization of [A2RI36_LACLM] by SWISSPFAM
  • Other resources with information on 3F8F
  • Community annotation for 3F8F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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