3F8Y	Oxidoreductase	date	Nov 13, 2008
title	Correlations Of Human Dihydrofolate Reductase With Structura Human Active Site Mutant Enzyme Complexes
authors	V.Cody, J.Pace, J.Makin, J.Piraino, S.F.Queener, A.Rosowsky
compound		source
Molecule: Dihydrofolate Reductase Chain: A Ec: 1.5.1.3 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dhfr, Dhfrp1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pds5
symmetry	Space Group: H 3	R_factor 0.190 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.294 84.294 78.117 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	DH1, NDP, SO4 BindingDB	enzyme	Oxidoreductase E.C.1.5.1.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Correlations of Inhibitor Kinetics for Pneumocystis jirovecii and Human Dihydrofolate Reductase with Structural Data for Human Active Site Mutant Enzyme Complexes (dagger) (double dagger)., Cody V, Pace J, Makin J, Piraino J, Queener SF, Rosowsky A, Biochemistry. 2009 Feb 5. PMID:19196009

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (3f8y.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 3F8Y CSU: Contacts of Structural Units for 3F8Y Structure Factors (568 Kb) Retrieve 3F8Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F8Y from S2C, [Save to disk] Re-refined 3f8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F8Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F8Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F8Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f8y] [3f8y_A] SWISS-PROT database: [P00374] Domain organization of [DYR_HUMAN] by SWISSPFAM

Other resources with information on 3F8Y

Community annotation for 3F8Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---