3FDN	Transferase	date	Nov 26, 2008
title	Structure-Based Drug Design Of Novel Aurora Kinase A Inhibit Structure Basis For Potency And Specificity
authors	J.S.Leou, J.S.Wu, M.S.Coumar, P.Shukla, H.P.Hsieh, S.Y.Wu
compound		source
Molecule: Serinethreonine-Protein Kinase 6 Chain: A Fragment: Catalytic Domain Synonym: Aurora Kinase A, Aurora-A, Serinethreonine Kinase Auroraipl1-Related Kinase 1, Aurora-Related Kinase 1, Hark Tumor-Amplified Kinase; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 61 2 2	R_factor 0.228 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.613 81.613 169.145 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MMH	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based drug design of novel Aurora kinase A inhibitors: structural basis for potency and specificity., Coumar MS, Leou JS, Shukla P, Wu JS, Dixit AK, Lin WH, Chang CY, Lien TW, Tan UK, Chen CH, Hsu JT, Chao YS, Wu SY, Hsieh HP, J Med Chem. 2009 Feb 26;52(4):1050-62. PMID:19140666

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3fdn.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 3FDN CSU: Contacts of Structural Units for 3FDN Structure Factors (273 Kb) Retrieve 3FDN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FDN from S2C, [Save to disk] Re-refined 3fdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FDN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FDN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FDN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fdn] [3fdn_A] SWISS-PROT database: [O14965] Domain organization of [STK6_HUMAN] by SWISSPFAM Domain found in 3FDN: [S_TKc ] by SMART

Other resources with information on 3FDN

Community annotation for 3FDN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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