3FEA Cell Cycle date Nov 28, 2008
title Crystal Structure Of Hdmx Bound To The P53-Peptidomimetic Ac Aib-Pmp-6-Cl-Trp-Glu-Ac3c-Leu-Nh2 At 1.33a
authors J.Kallen
compound source
Molecule: Mdm4 Protein
Chain: A
Fragment: N-Terminal Domain, Unp Residues 14-111
Synonym: P53-Binding Protein Mdm4, Mdm2-Like P53-Binding Pr Protein Mdmx, Double Minute 4 Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm4, Mdmx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28 Derivative Pxi607e

Molecule: P53-Peptidomimetic Ac-Phe-Met-Aib-Pmp-6-Cl-Trp-Gl Leu-Nh2;
Chain: L, M
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesis
symmetry Space Group: P 41
R_factor 0.193 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.249 42.249 70.449 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.33 Å
ligand 1AC, 6CW, ACE, AIB, MPD, NH2, PM3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of human MdmX (HdmX) in complex with p53 peptide-analogues reveal surprising conformational changes., Kallen J, Goepfert A, Blechschmidt A, Izaac A, Geiser M, Tavares G, Ramage P, Furet P, Masuya K, Lisztwan J, J Biol Chem. 2009 Jan 19. PMID:19153082
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3fea.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (3fea.pdb2.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 3FEA
  • CSU: Contacts of Structural Units for 3FEA
  • Likely Quarternary Molecular Structure file(s) for 3FEA
  • Structure Factors (343 Kb)
  • Retrieve 3FEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FEA from S2C, [Save to disk]
  • Re-refined 3fea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FEA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FEA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fea] [3fea_A] [3fea_L] [3fea_M]
  • SWISS-PROT database: [O15151]
  • Domain organization of [MDM4_HUMAN] by SWISSPFAM
  • Other resources with information on 3FEA
  • Community annotation for 3FEA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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