3FFV Protein Binding date Dec 04, 2008
title Crystal Structure Analysis Of Syd
authors R.Maurus, G.D.Brayer
compound source
Molecule: Protein Syd
Chain: A, B
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
symmetry Space Group: H 3
R_factor 0.182 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.600 167.600 41.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure, Binding, and Activity of Syd, a SecY-interacting Protein., Dalal K, Nguyen N, Alami M, Tan J, Moraes TF, Lee WC, Maurus R, Sligar SS, Brayer GD, Duong F, J Biol Chem. 2009 Mar 20;284(12):7897-902. Epub 2009 Jan 12. PMID:19139097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3ffv.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3ffv.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 3FFV
  • Likely Quarternary Molecular Structure file(s) for 3FFV
  • Structure Factors (267 Kb)
  • Retrieve 3FFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FFV from S2C, [Save to disk]
  • Re-refined 3ffv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FFV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FFV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ffv_B] [3ffv_A] [3ffv]
  • SWISS-PROT database: [P0A8U0]
  • Domain organization of [SYDP_ECOLI] by SWISSPFAM
    • Other resources with information on 3FFV
  • Community annotation for 3FFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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