3FI6	Metal Binding Protein	date	Dec 11, 2008
title	Apo-H49afr With High Content Of Pd Ions
authors	M.Abe, T.Ueno, K.Hirata, M.Suzuki, S.Abe, N.Shimizu, M.Yamaoto, M.T Y.Watanabe
compound		source
Molecule: Ferritin Light Chain Chain: A Synonym: Ferritin L Subunit Engineered: Yes Mutation: Yes		Organism_scientific: Equus Caballus Organism_common: Horse Organism_taxid: 9796 Gene: Ftl Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Nova Blue Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmk2
symmetry	Space Group: F 4 3 2	R_factor 0.196 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 180.701 180.701 180.701 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CD, PD, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Process of Accumulation of Metal Ions on the Interior Surface of apo-Ferritin: Crystal Structures of a Series of apo-Ferritins Containing Variable Quantities of Pd(II) Ions., Ueno T, Abe M, Hirata K, Abe S, Suzuki M, Shimizu N, Yamamoto M, Takata M, Watanabe Y, J Am Chem Soc. 2009 Mar 24. PMID:19317403

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (3fi6.pdb1.gz) 744 Kb LPC: Ligand-Protein Contacts for 3FI6 CSU: Contacts of Structural Units for 3FI6 Likely Quarternary Molecular Structure file(s) for 3FI6 Structure Factors (345 Kb) Retrieve 3FI6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FI6 from S2C, [Save to disk] Re-refined 3fi6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FI6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FI6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FI6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fi6_A] [3fi6] SWISS-PROT database: [P02791] Domain organization of [FRIL_HORSE] by SWISSPFAM

Other resources with information on 3FI6

Community annotation for 3FI6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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