3FKY Ligase date Dec 18, 2008
title Crystal Structure Of The Glutamine Synthetase Gln1deltan18 F Yeast Saccharomyces Cerevisiae
authors Y.X.He, L.Gui, Y.Z.Liu, Y.Du, Y.Y.Zhou, P.Li, C.Z.Zhou
compound source
Molecule: Glutamine Synthetase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Gs, Glutamate--Ammonia Ligase
Ec: 6.3.1.2
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: S288c
Gene: Gln1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.650 129.940 135.610 93.46 104.61 104.01
method X-Ray Diffractionresolution 2.95 Å
ligand FLC enzyme Ligase E.C.6.3.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceCrystal structure of Saccharomyces cerevisiae glutamine synthetase Gln1 suggests a nanotube-like supramolecular assembly., He YX, Gui L, Liu YZ, Du Y, Zhou Y, Li P, Zhou CZ, Proteins. 2009 Jul;76(1):249-54. PMID:19322816
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1066 Kb) [Save to disk]
  • Biological Unit Coordinates (3fky.pdb1.gz) 534 Kb
  • Biological Unit Coordinates (3fky.pdb2.gz) 533 Kb
  • LPC: Ligand-Protein Contacts for 3FKY
  • CSU: Contacts of Structural Units for 3FKY
  • Structure Factors (8608 Kb)
  • Retrieve 3FKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FKY from S2C, [Save to disk]
  • Re-refined 3fky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FKY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FKY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fky_R] [3fky_M] [3fky_D] [3fky_O] [3fky_E] [3fky_L] [3fky_N] [3fky_J] [3fky_P] [3fky_C] [3fky_G] [3fky] [3fky_F] [3fky_B] [3fky_S] [3fky_K] [3fky_I] [3fky_A] [3fky_Q] [3fky_H] [3fky_T]
  • SWISS-PROT database: [P32288]
  • Domain organization of [GLNA_YEAST] by SWISSPFAM
  • Domain found in 3FKY: [Gln-synt_C ] by SMART
  • Other resources with information on 3FKY
  • Community annotation for 3FKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science