3FS6 Oxidoreductase date Jan 09, 2009
title Correlations Of Inhibitor Kinetics For Pneumocystis Jiroveci Human Dihydrofolate Reductase With Structural Data For Huma Site Mutant Enzyme Complexes
authors V.Cody, J.Pace, J.Makin, J.Piraino, S.F.Queener, A.Rosowsky
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Ec: 1.5.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Pds5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pds5
symmetry Space Group: H 3
R_factor 0.245 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.098 84.098 78.054 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.23 Å
ligand DH1, NDP BindingDB enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCorrelations of Inhibitor Kinetics for Pneumocystis jirovecii and Human Dihydrofolate Reductase with Structural Data for Human Active Site Mutant Enzyme Complexes (dagger) (double dagger)., Cody V, Pace J, Makin J, Piraino J, Queener SF, Rosowsky A, Biochemistry. 2009 Feb 5. PMID:19196009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3fs6.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3FS6
  • CSU: Contacts of Structural Units for 3FS6
  • Structure Factors (911 Kb)
  • Retrieve 3FS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FS6 from S2C, [Save to disk]
  • Re-refined 3fs6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FS6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FS6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fs6] [3fs6_A]
  • SWISS-PROT database: [P00374]
  • Domain organization of [DYR_HUMAN] by SWISSPFAM
  • Other resources with information on 3FS6
  • Community annotation for 3FS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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