3FVB Metal Binding Protein date Jan 15, 2009
title Crystal Structure Of Ferritin (Bacterioferritin) From Brucel Melitensis
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Bacterioferritin
Chain: A, B
Engineered: Yes
 Organism_scientific: Brucella Melitensis Biovar Abortus 230
Organism_taxid: 359391
Strain: Biovar Abortus 2308
Gene: Bfr, Bab2_0675
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: F 2 3
R_factor 0.181 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.810 174.810 174.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand CL, FE, HEM, IMD, MG, NA enzyme
Gene BAB2
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ferroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3fvb.pdb1.gz) 704 Kb
  • LPC: Ligand-Protein Contacts for 3FVB
  • CSU: Contacts of Structural Units for 3FVB
  • Likely Quarternary Molecular Structure file(s) for 3FVB
  • Structure Factors (593 Kb)
  • Retrieve 3FVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FVB from S2C, [Save to disk]
  • Re-refined 3fvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FVB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FVB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fvb] [3fvb_A] [3fvb_B]
  • SWISS-PROT database: [Q2YKI4]
  • Domain organization of [Q2YKI4_BRUA2] by SWISSPFAM
    • Other resources with information on 3FVB
  • Community annotation for 3FVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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