3FVC	Viral Protein	date	Jan 15, 2009
title	Crystal Structure Of A Trimeric Variant Of The Epstein-Barr Glycoprotein B
authors	M.Backovic
compound		source
Molecule: Glycoprotein Gp110 Chain: A Fragment: Ectodomain Synonym: Gp115 Engineered: Yes Mutation: Yes		Organism_scientific: Human Herpesvirus 4 Organism_taxid: 10377 Strain: B95 Gene: Balf4, Vglb_ebv Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_vector_type: Baculovirus Expression_system_vector: Pbacgus-3
symmetry	Space Group: P 3 2 1	R_factor 0.242 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.800 106.800 210.750 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	NAG	enzyme
Gene	VGLB (E. virus)
Primary reference	Structure of a trimeric variant of the Epstein-Barr virus glycoprotein B., Backovic M, Longnecker R, Jardetzky TS, Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2880-5. Epub 2009 Feb 5. PMID:19196955

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (3fvc.pdb1.gz) 268 Kb LPC: Ligand-Protein Contacts for 3FVC CSU: Contacts of Structural Units for 3FVC Likely Quarternary Molecular Structure file(s) for 3FVC Structure Factors (351 Kb) Retrieve 3FVC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FVC from S2C, [Save to disk] Re-refined 3fvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FVC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FVC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FVC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fvc] [3fvc_A] SWISS-PROT database: [P03188] Domain organization of [GB_EBVB9] by SWISSPFAM

Other resources with information on 3FVC

Community annotation for 3FVC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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