3FZ9 Oxidoreductase date Jan 24, 2009
title Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione
authors C.Didierjean, C.Corbier, C.S.Koh, N.Rouhier, J.P.Jacquot
compound source
Molecule: Glutaredoxin
Chain: A
Engineered: Yes
Organism_scientific: Populus Tremula X Populus Tremuloides
Organism_taxid: 47664
Organ: Leaf
Gene: Grxs12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psbet
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.032 47.265 55.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GSH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function relationship of the chloroplastic glutaredoxin S12 with an atypical WCSYS active site., Couturier J, Koh CS, Zaffagnini M, Winger AM, Gualberto JM, Corbier C, Decottignies P, Jacquot JP, Lemaire SD, Didierjean C, Rouhier N, J Biol Chem. 2009 Apr 3;284(14):9299-310. Epub 2009 Jan 21. PMID:19158074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3fz9.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3FZ9
  • CSU: Contacts of Structural Units for 3FZ9
  • Likely Quarternary Molecular Structure file(s) for 3FZ9
  • Structure Factors (170 Kb)
  • Retrieve 3FZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FZ9 from S2C, [Save to disk]
  • Re-refined 3fz9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FZ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fz9] [3fz9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3FZ9
  • Community annotation for 3FZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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