3G0Q	Hydrolase Dna	date	Jan 28, 2009
title	Crystal Structure Of Muty Bound To Its Inhibitor Dna
authors	S.Lee, G.L.Verdine
compound		source
Molecule: Ag-Specific Adenine Glycosylase Chain: A Ec: 3.2.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Bacillus Stearothermophilus Organism_taxid: 1422 Gene: Muty Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
Molecule: 5'-D(Apapgpapcp(8og)Pgpgpgpapc)-3' Chain: B Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gptpcpcpcpapgptpcptpt)-3' Chain: C Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.246 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.700 85.900 142.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	8OG, A5L, CA, SF4	enzyme	Hydrolase E.C.3.2.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Atomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylase., Lee S, Verdine GL, Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18497-502. Epub 2009 Oct 19. PMID:19841264

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (3g0q.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 3G0Q CSU: Contacts of Structural Units for 3G0Q Structure Factors (244 Kb) Retrieve 3G0Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G0Q from S2C, [Save to disk] Re-refined 3g0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G0Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G0Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G0Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g0q_A] [3g0q_B] [3g0q_C] [3g0q] SWISS-PROT database: [P83847] Domain organization of [P83847_BACST] by SWISSPFAM Domains found in 3G0Q: [ENDO3c] [FES ] by SMART

Other resources with information on 3G0Q

Community annotation for 3G0Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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