3G0W Hormone date Jan 29, 2009
title Crystal Structure Of The Rat Androgen Receptor Ligand Bindin Complex With An N-Aryl-Oxazolidin 2-Imine Inhibitor
authors J.S.Sack
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ligand-Binding Domain
Synonym: Dihydrotestosterone Receptor, Nuclear Receptor Sub Group C Member 4;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ar, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.862 65.739 69.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand LGB BindingDB enzyme
Primary referenceN-Aryl-oxazolidin-2-imine Muscle Selective Androgen Receptor Modulators Enhance Potency through Pharmacophore Reorientation (dagger) ( big up tri, open)., Nirschl AA, Zou Y, Krystek SR, Sutton JC, Simpkins LM, Lupisella JA, Kuhns JE, Seethala R, Golla R, Sleph PG, Beehler BC, Grover GJ, Egan D, Fura A, Vyas VP, Li YX, Sack JS, Kish KF, An Y, Bryson JA, Gougoutas JZ, Dimarco J, Zahler R, Ostrowski J, Hamann LG, J Med Chem. 2009 Apr 7. PMID:19351168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0w.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3G0W
  • CSU: Contacts of Structural Units for 3G0W
  • Likely Quarternary Molecular Structure file(s) for 3G0W
  • Structure Factors (131 Kb)
  • Retrieve 3G0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0W from S2C, [Save to disk]
  • Re-refined 3g0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G0W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0w_A] [3g0w]
  • SWISS-PROT database: [P15207]
  • Domain organization of [ANDR_RAT] by SWISSPFAM
  • Domain found in 3G0W: [HOLI ] by SMART
  • Other resources with information on 3G0W
  • Community annotation for 3G0W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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