OCA Atlas for 3G49

3G49

Oxidoreductase Oxidoreductase Inhibitor

date

Feb 03, 2009

title

N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxyst Dehydrogenase Type 1: Discovery Of Pf-915275

authors

T.A.Pauly

compound

source

Molecule: 11-Beta-Hydroxysteroid Dehydrogenase 1
Chain: A, B, C, D
Fragment: Lumenal Domain
Synonym: Corticosteroid 11-Beta-Dehydrogenase Isozyme 1, 11 Hsd1, 11-Dh;
Ec: 1.1.1.146
Engineered: Yes

Organism_scientific: Cavia Porcellus
Organism_common: Guinea Pig
Organism_taxid: 10141
Gene: Hsd11b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: P 21 21 21

R_factor

0.189

R_Free

0.225

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
78.207	83.599	179.202	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.50 Å

ligand

3G4, NAP

enzyme

Oxidoreductase E.C.1.1.1.146 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

N-(Pyridin-2-yl) arylsulfonamide inhibitors of 11beta-hydroxysteroid dehydrogenase type 1: Discovery of PF-915275., Siu M, Johnson TO, Wang Y, Nair SK, Taylor WD, Cripps SJ, Matthews JJ, Edwards MP, Pauly TA, Ermolieff J, Castro A, Hosea NA, LaPaglia A, Fanjul AN, Vogel JE, Bioorg Med Chem Lett. 2009 Jul 1;19(13):3493-7. Epub 2009 May 7. PMID:19473839

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]

Biological Unit Coordinates (3g49.pdb1.gz) 85 Kb

Biological Unit Coordinates (3g49.pdb2.gz) 85 Kb

LPC: Ligand-Protein Contacts for 3G49

CSU: Contacts of Structural Units for 3G49

Structure Factors (598 Kb)

Retrieve 3G49 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3G49 from S2C, [Save to disk]

Re-refined 3g49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G49 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G49

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3G49, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g49_B] [3g49_D] [3g49_A] [3g49_C] [3g49]

SWISS-PROT database: [Q6QLL4]

Domain organization of [DHI1_CAVPO] by SWISSPFAM

Other resources with information on 3G49

Community annotation for 3G49 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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