3G5W Metal Binding Protein date Feb 05, 2009
title Crystal Structure Of Blue Copper Oxidase From Nitrosomonas E
authors T.J.Lawton, L.A.Sayavedra-Soto, D.J.Arp, A.C.Rosenzweig
compound source
Molecule: Multicopper Oxidase Type 1
Chain: A, B, C, D, E, F
Fragment: Unp Residues 44-361
 Organism_scientific: Nitrosomonas Europaea
Organism_taxid: 915
symmetry Space Group: P 1
R_factor 0.166 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.140 76.254 105.145 81.48 73.38 61.84
method X-Ray Diffractionresolution 1.90 Å
ligand C1O, C2O, CU, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of a two-domain multicopper oxidase: implications for the evolution of multicopper blue proteins., Lawton TJ, Sayavedra-Soto LA, Arp DJ, Rosenzweig AC, J Biol Chem. 2009 Apr 10;284(15):10174-80. Epub 2009 Feb 17. PMID:19224923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (3g5w.pdb1.gz) 164 Kb
  • Biological Unit Coordinates (3g5w.pdb2.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 3G5W
  • CSU: Contacts of Structural Units for 3G5W
  • Likely Quarternary Molecular Structure file(s) for 3G5W
  • Structure Factors (2271 Kb)
  • Retrieve 3G5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G5W from S2C, [Save to disk]
  • Re-refined 3g5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3G5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3G5W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G5W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g5w_A] [3g5w_E] [3g5w_B] [3g5w_D] [3g5w_C] [3g5w_F] [3g5w]
  • SWISS-PROT database: [Q82VX3]
  • Domain organization of [Q82VX3_NITEU] by SWISSPFAM
    • Other resources with information on 3G5W
  • Community annotation for 3G5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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