3G8L Immune System date Feb 12, 2009
title Crystal Structure Of Murine Natural Killer Cell Receptor, Ly
authors S.Cho
compound source
Molecule: Lectin-Related Nk Cell Receptor Ly49l1
Chain: A, B, C, D
Fragment: C-Type Lectin-Like Domain With A Part Of The Stal Residues 80-281);
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Klra12, Mouse
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 31 1 2
R_factor 0.223 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.045 78.045 216.738 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceDistinct conformations of Ly49 natural killer cell receptors mediate MHC class I recognition in trans and cis., Back J, Malchiodi EL, Cho S, Scarpellino L, Schneider P, Kerzic MC, Mariuzza RA, Held W, Immunity. 2009 Oct 16;31(4):598-608. Epub 2009 Oct 8. PMID:19818651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (3g8l.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (3g8l.pdb2.gz) 53 Kb
  • CSU: Contacts of Structural Units for 3G8L
  • Structure Factors (186 Kb)
  • Retrieve 3G8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G8L from S2C, [Save to disk]
  • Re-refined 3g8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G8L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G8L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g8l_D] [3g8l] [3g8l_C] [3g8l_B] [3g8l_A]
  • SWISS-PROT database: [Q9JIP9]
  • Domain organization of [Q9JIP9_MOUSE] by SWISSPFAM
  • Domain found in 3G8L: [CLECT ] by SMART
  • Other resources with information on 3G8L
  • Community annotation for 3G8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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