3G90 Transferase date Feb 12, 2009
title Jnk-3 Bound To (Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[D][1,3]Dio Methyl)-3-(Hydroxyimino)Indolin-2-One
authors X.Xie, M.D.Jacobs
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: X
Fragment: Kinase Domain
Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk3, Jnk3a, Mapk10, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.655 72.289 107.189 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand J72 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructure-based design and parallel synthesis of N-benzyl isatin oximes as JNK3 MAP kinase inhibitors., Cao J, Gao H, Bemis G, Salituro F, Ledeboer M, Harrington E, Wilke S, Taslimi P, Pazhanisamy S, Xie X, Jacobs M, Green J, Bioorg Med Chem Lett. 2009 Mar 17. PMID:19361991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3g90.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3G90
  • CSU: Contacts of Structural Units for 3G90
  • Likely Quarternary Molecular Structure file(s) for 3G90
  • Structure Factors (204 Kb)
  • Retrieve 3G90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G90 from S2C, [Save to disk]
  • Re-refined 3g90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G90
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G90, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g90] [3g90_X]
  • SWISS-PROT database: [P53779]
  • Domain organization of [MK10_HUMAN] by SWISSPFAM
  • Domain found in 3G90: [S_TKc ] by SMART
  • Other resources with information on 3G90
  • Community annotation for 3G90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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