3GAN Structural Genomics, Unknown Function date Feb 17, 2009
title Crystal Structure Of Gene Product From Arabidopsis Thaliana With Bound Suramin
authors E.S.Burgie, C.A.Bingman, G.E.Wesenberg, G.N.Phillips Jr., Center Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Uncharacterized Protein At3g22680
Chain: A
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Strain: Cv. Columbia
Gene: At3g22680, At3g22680.1, Mwi23.5, Q9luj3, Y3268_arath
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp13
symmetry Space Group: P 32 2 1
R_factor 0.190 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.381 58.381 90.287 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, MSE, SVR enzyme
Gene Y3268 (A. thaliana)
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3gan.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3gan.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3GAN
  • CSU: Contacts of Structural Units for 3GAN
  • Likely Quarternary Molecular Structure file(s) for 3GAN
  • Structure Factors (314 Kb)
  • Retrieve 3GAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GAN from S2C, [Save to disk]
  • Re-refined 3gan structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GAN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GAN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gan_A] [3gan]
  • SWISS-PROT database: [Q9LUJ3]
  • Domain organization of [Y3268_ARATH] by SWISSPFAM
    • Other resources with information on 3GAN
  • Community annotation for 3GAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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