3GX2 Rna date Apr 01, 2009
title Ttesam-I Riboswitch Variant A94gu34c Bound To Sinefungin
authors R.K.Montange, R.T.Batey
compound source
Molecule: Rna (94-Mer)
Chain: A
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: This Sequence Is Based On A Sequence Found I Tengcongensis
symmetry Space Group: P 43 21 2
R_factor 0.222 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.614 62.614 158.395 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MG, SFG enzyme
Primary referenceDiscrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch., Montange RK, Mondragon E, van Tyne D, Garst AD, Ceres P, Batey RT, J Mol Biol. 2009 Dec 16. PMID:20006621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3gx2.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3GX2
  • CSU: Contacts of Structural Units for 3GX2
  • Structure Factors (123 Kb)
  • Retrieve 3GX2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GX2 from S2C, [Save to disk]
  • Re-refined 3gx2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GX2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GX2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GX2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gx2] [3gx2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3GX2
  • Community annotation for 3GX2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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