3H12 Isomerase date Apr 10, 2009
title Crystal Structure Of Putative Mandelate Racemase From Bordet Bronchiseptica Rb50
authors V.N.Malashkevich, R.Toro, C.Morano, J.M.Sauder, S.K.Burley, S.C.A York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Mandelate Racemase
Chain: A, B
Engineered: Yes
 Organism_scientific: Bordetella Bronchiseptica
Organism_common: Alcaligenes Bronchisepticus
Organism_taxid: 518
Strain: Rb50
Gene: Bb4687
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: I 4
R_factor 0.146 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.148 116.148 128.136 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3h12.pdb1.gz) 529 Kb
  • LPC: Ligand-Protein Contacts for 3H12
  • CSU: Contacts of Structural Units for 3H12
  • Likely Quarternary Molecular Structure file(s) for 3H12
  • Structure Factors (3552 Kb)
  • Retrieve 3H12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H12 from S2C, [Save to disk]
  • Re-refined 3h12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H12, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h12_B] [3h12] [3h12_A]
  • SWISS-PROT database: [Q7WEE8]
  • Domain organization of [Q7WEE8_BORBR] by SWISSPFAM
  • Domain found in 3H12: [MR_MLE ] by SMART
    • Other resources with information on 3H12
  • Community annotation for 3H12 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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