3H2G Hydrolase date Apr 14, 2009
title Crystal Structure Of A Rice Cell Wall Degrading Esterase Lipa From Xanthomonas Oryzae
authors G.Aparna, A.Chatterjee, R.V.Sonti, R.Sankaranarayanan
compound source
Molecule: Esterase
Chain: A
Fragment: Residues In Unp 45-441
Synonym: Putative Uncharacterized Protein
Ec: 3.1.1.-
Engineered: Yes
Organism_scientific: Xanthomonas Oryzae Pv. Oryzae
Organism_taxid: 64187
Strain: Bxo43
Gene: Lipa
Expression_system: Xanthomonas Oryzae Pv. Oryzae
Expression_system_taxid: 64187
Expression_system_strain: Bxo43
Expression_system_vector_type: Broad Host Range Vector
Expression_system_plasmid: Phm1
symmetry Space Group: C 1 2 1
R_factor 0.161 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.660 54.680 66.330 90.00 92.65 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand
enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • aminopeptidase activity


  • Primary referenceA Cell Wall-Degrading Esterase of Xanthomonas oryzae Requires a Unique Substrate Recognition Module for Pathogenesis on Rice., Aparna G, Chatterjee A, Sonti RV, Sankaranarayanan R, Plant Cell. 2009 Jun;21(6):1860-73. Epub 2009 Jun 12. PMID:19525415
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3h2g.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 3H2G
  • Structure Factors (233 Kb)
  • Retrieve 3H2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H2G from S2C, [Save to disk]
  • Re-refined 3h2g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H2G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H2G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h2g] [3h2g_A]
  • SWISS-PROT database: [Q5H5J0]
  • Domain organization of [Q5H5J0_XANOR] by SWISSPFAM
  • Other resources with information on 3H2G
  • Community annotation for 3H2G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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