3HD6	Membrane Protein, Transport Protein	date	May 06, 2009
title	Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
authors	F.Gruswitz, S.Chaudhary, J.D.Ho, B.Pezeshki, C.M.Ho, R.M.Stroud, For Structures Of Membrane Proteins (Csmp)
compound		source
Molecule: Ammonium Transporter Rh Type C Chain: A Synonym: Rhesus Blood Group Family Type C Glycoprotein, Rh Type C Glycoprotein, Rh Type C Glycoprotein, Tumor-Related Drc2, Rh Glycoprotein Kidney; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: C15orf6, Cdrc2, Pdrc2, Rhcg, Rhgk Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Expression_system_vector_type: Plasmid Expression_system_plasmid: Pacmv-Teto-Rho
symmetry	Space Group: P 63	R_factor 0.168 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.830 99.830 101.076 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	BOG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Function of human Rh based on structure of RhCG at 2.1 A., Gruswitz F, Chaudhary S, Ho JD, Schlessinger A, Pezeshki B, Ho CM, Sali A, Westhoff CM, Stroud RM, Proc Natl Acad Sci U S A. 2010 May 25;107(21):9638-43. Epub 2010 May 10. PMID:20457942

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (3hd6.pdb1.gz) 191 Kb LPC: Ligand-Protein Contacts for 3HD6 CSU: Contacts of Structural Units for 3HD6 Structure Factors (486 Kb) Retrieve 3HD6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HD6 from S2C, [Save to disk] Re-refined 3hd6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HD6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HD6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HD6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hd6] [3hd6_A] SWISS-PROT database: [Q9UBD6] Belongs to the ammonium transporter channel (amt) family according to TCDB. Domain organization of [RHCG_HUMAN] by SWISSPFAM

Other resources with information on 3HD6

Community annotation for 3HD6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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