3HFH Transcription Regulator date May 11, 2009
title Crystal Structure Of Tandem Ff Domains
authors M.Lu, J.Yang, Z.Ren, S.Subir, M.T.Bedford, R.H.Jacobson, J.S.Mcmur X.Chen
compound source
Molecule: Transcription Elongation Regulator 1
Chain: A, B
Fragment: Ff Domains: Unp Residues 661-845
Synonym: Tata Box-Binding Protein-Associated Factor 2s, Tra Factor Ca150;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca150, Taf2s, Tcerg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 6 2 2
R_factor 0.230 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.300 141.300 155.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand MLY, MSE enzyme
Primary referenceCrystal Structure of the Three-Tandem FF Domains of the Transcription Elongation Regulator CA150., Lu M, Yang J, Ren Z, Sabui S, Espejo A, Bedford MT, Jacobson RH, Jeruzalmi D, McMurray JS, Chen X, J Mol Biol. 2009 Aug 4. PMID:19660470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3hfh.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3hfh.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3HFH
  • CSU: Contacts of Structural Units for 3HFH
  • Structure Factors (887 Kb)
  • Retrieve 3HFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HFH from S2C, [Save to disk]
  • Re-refined 3hfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HFH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HFH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hfh] [3hfh_B] [3hfh_A]
  • SWISS-PROT database: [O14776]
  • Domain organization of [TCRG1_HUMAN] by SWISSPFAM
  • Domain found in 3HFH: [FF ] by SMART
  • Other resources with information on 3HFH
  • Community annotation for 3HFH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science