3HHJ Hydrolase date May 15, 2009
title Crystal Structure Of Mutator Mutt From Bartonella Henselae
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Mutator Mutt Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Bartonella Henselae
Organism_taxid: 283166
Strain: Houston-1
Atcc: 49882
Gene: Mutt, Bh02020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.500 93.490 43.880 90.00 109.24 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a Nudix hydrolase (MutT) in the Mg(2+)-bound state from Bartonella henselae, the bacterium responsible for cat scratch fever., Buchko GW, Edwards TE, Abendroth J, Arakaki TL, Law L, Napuli AJ, Hewitt SN, Van Voorhis WC, Stewart LJ, Staker BL, Myler PJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1078-83. Epub 2011 Aug 16. PMID:21904053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3hhj.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3hhj.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3HHJ
  • CSU: Contacts of Structural Units for 3HHJ
  • Likely Quarternary Molecular Structure file(s) for 3HHJ
  • Structure Factors (319 Kb)
  • Retrieve 3HHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HHJ from S2C, [Save to disk]
  • Re-refined 3hhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HHJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HHJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hhj] [3hhj_B] [3hhj_A]
  • SWISS-PROT database: [Q6G5F4]
  • Domain organization of [Q6G5F4_BARHE] by SWISSPFAM
  • Other resources with information on 3HHJ
  • Community annotation for 3HHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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