3HIH Transferase date May 20, 2009
title Structure Of Human Plk1-Pbd With Glycerol And Sulfate In The Phophopeptide Binding Site
authors A.Wlodawer, T.Moulaei
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A, B
Synonym: Polo-Like Kinase 1, Plk-1, Serinethreonine-Protei 13, Stpk13;
Ec: 2.7.11.21
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk, Plk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-527
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.300 102.300 68.500 90.00 93.20 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, GOL, SO4 enzyme Transferase E.C.2.7.11.21 BRENDA
Primary referenceStructural and functional analyses of minimal phosphopeptides targeting the polo-box domain of polo-like kinase 1., Yun SM, Moulaei T, Lim D, Bang JK, Park JE, Shenoy SR, Liu F, Kang YH, Liao C, Soung NK, Lee S, Yoon DY, Lim Y, Lee DH, Otaka A, Appella E, McMahon JB, Nicklaus MC, Burke Jr TR, Yaffe MB, Wlodawer A, Lee KS, Nat Struct Mol Biol. 2009 Jul 13. PMID:19597481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3hih.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3hih.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3HIH
  • CSU: Contacts of Structural Units for 3HIH
  • Likely Quarternary Molecular Structure file(s) for 3HIH
  • Structure Factors (615 Kb)
  • Retrieve 3HIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HIH from S2C, [Save to disk]
  • Re-refined 3hih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HIH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HIH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hih_B] [3hih_A] [3hih]
  • SWISS-PROT database: [P53350]
  • Domain organization of [PLK1_HUMAN] by SWISSPFAM
    • Other resources with information on 3HIH
  • Community annotation for 3HIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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