3HJK Signaling Protein date May 21, 2009
title 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid (Vvd
authors B.D.Zoltowski, B.J.Vaccaro, B.R.Crane
compound source
Molecule: Vivid Pas Protein Vvd
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Neurospora Crassa
Organism_taxid: 5141
Gene: G17a4.050, Vivid, Vvd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.244 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.780 80.300 56.900 90.00 94.76 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FAD enzyme
note 3HJK (Molecule of the Month:pdb183)
Primary referenceMechanism-based tuning of a LOV domain photoreceptor., Zoltowski BD, Vaccaro B, Crane BR, Nat Chem Biol. 2009 Aug 30. PMID:19718042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3hjk.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3hjk.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3HJK
  • CSU: Contacts of Structural Units for 3HJK
  • Structure Factors (173 Kb)
  • Retrieve 3HJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HJK from S2C, [Save to disk]
  • Re-refined 3hjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HJK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HJK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hjk] [3hjk_A] [3hjk_B]
  • SWISS-PROT database: [Q9C3Y6]
  • Domain organization of [Q9C3Y6_NEUCR] by SWISSPFAM
  • Domain found in 3HJK: [PAC ] by SMART
    • Other resources with information on 3HJK
  • Community annotation for 3HJK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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