3HL4 Transferase date May 26, 2009
title Crystal Structure Of A Mammalian Ctp:Phosphocholine Cytidylyltransferase With Cdp-Choline
authors J.Lee, M.Paetzel, R.B.Cornell
compound source
Molecule: Choline-Phosphate Cytidylyltransferase A
Chain: A, B
Fragment: Domain N And C
Synonym: Phosphorylcholine Transferase A, Ctp:Phosphocholin Cytidylyltransferase A, Cct A, Ct A, Cct-Alpha;
Ec: 2.7.7.15
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ctpct, Pcyt1, Pcyt1a
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: P 21 21 2
R_factor 0.220 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.973 129.348 43.565 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CDC, FMT, GOL enzyme Transferase E.C.2.7.7.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a mammalian CTP: phosphocholine cytidylyltransferase catalytic domain reveals novel active site residues within a highly conserved nucleotidyltransferase fold., Lee J, Johnson J, Ding Z, Paetzel M, Cornell RB, J Biol Chem. 2009 Nov 27;284(48):33535-48. Epub 2009 Sep 25. PMID:19783652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3hl4.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3HL4
  • CSU: Contacts of Structural Units for 3HL4
  • Structure Factors (285 Kb)
  • Retrieve 3HL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HL4 from S2C, [Save to disk]
  • Re-refined 3hl4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HL4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HL4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HL4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hl4] [3hl4_B] [3hl4_A]
  • SWISS-PROT database: [P19836]
  • Domain organization of [PCY1A_RAT] by SWISSPFAM
  • Other resources with information on 3HL4
  • Community annotation for 3HL4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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