3HMV	Hydrolase	date	May 29, 2009
title	Catalytic Domain Of Human Phosphodiesterase 4b2b In Complex Tetrahydrobenzothiophene Inhibitor
authors	D.O.Somers, M.Neu
compound		source
Molecule: Camp-Specific 3',5'-Cyclic Phosphodiesterase 4b Chain: A, B Fragment: Catalytic Domain, Unp Residues 324-700 Synonym: Dpde4, Pde32 Ec: 3.1.4.17 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pde4b, Dpde4 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 41	R_factor 0.173 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.309 57.309 251.718 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.23 Å
ligand	GOL, HBT, MG, ZN	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Identification of PDE4B Over 4D subtype-selective inhibitors revealing an unprecedented binding mode., Kranz M, Wall M, Evans B, Miah A, Ballantine S, Delves C, Dombroski B, Gross J, Schneck J, Villa JP, Neu M, Somers DO, Bioorg Med Chem. 2009 Jul 15;17(14):5336-41. Epub 2009 Apr 5. PMID:19525117

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk] Biological Unit Coordinates (3hmv.pdb1.gz) 122 Kb Biological Unit Coordinates (3hmv.pdb2.gz) 122 Kb LPC: Ligand-Protein Contacts for 3HMV CSU: Contacts of Structural Units for 3HMV Structure Factors (298 Kb) Retrieve 3HMV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HMV from S2C, [Save to disk] Re-refined 3hmv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HMV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HMV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HMV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hmv_B] [3hmv_A] [3hmv] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3HMV: [HDc ] by SMART

Other resources with information on 3HMV

Community annotation for 3HMV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---