3HP7 Structural Genomics, Unknown Function date Jun 03, 2009
title Putative Hemolysin From Streptococcus Thermophilus.
authors J.Osipiuk, C.Hatzos, G.Cobb, A.Joachimiak, Midwest Center For St Genomics (Mcsg)
compound source
Molecule: Hemolysin, Putative
Chain: A
Engineered: Yes
 Organism_scientific: Streptococcus Thermophilus
Organism_taxid: 264199
Strain: Lmg 18311
Gene: Stu1215
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 21
R_factor 0.145 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.958 81.713 95.537 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand EOH, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3hp7.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3HP7
  • CSU: Contacts of Structural Units for 3HP7
  • Likely Quarternary Molecular Structure file(s) for 3HP7
  • Structure Factors (871 Kb)
  • Retrieve 3HP7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HP7 from S2C, [Save to disk]
  • Re-refined 3hp7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HP7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HP7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HP7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hp7] [3hp7_A]
  • SWISS-PROT database: [Q5M3Z4]
  • Domain organization of [Q5M3Z4_STRT2] by SWISSPFAM
  • Domain found in 3HP7: [S4 ] by SMART
    • Other resources with information on 3HP7
  • Community annotation for 3HP7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science