3HRC	Transferase	date	Jun 09, 2009
title	Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In With Atp
authors	V.Hindie, P.M.Alzari, R.M.Biondi
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Pdk1 Kinase Domain Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdk1, Pdpk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: C 1 2 1	R_factor 0.181 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.080 43.790 47.490 90.00 101.50 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	ATP, SEP	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and allosteric effects of low-molecular-weight activators on the protein kinase PDK1., Hindie V, Stroba A, Zhang H, Lopez-Garcia LA, Idrissova L, Zeuzem S, Hirschberg D, Schaeffer F, Jorgensen TJ, Engel M, Alzari PM, Biondi RM, Nat Chem Biol. 2009 Aug 30. PMID:19718043

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3hrc.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 3HRC CSU: Contacts of Structural Units for 3HRC Structure Factors (381 Kb) Retrieve 3HRC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HRC from S2C, [Save to disk] Re-refined 3hrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HRC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HRC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HRC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hrc_A] [3hrc] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 3HRC: [S_TKc ] by SMART

Other resources with information on 3HRC

Community annotation for 3HRC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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