3HYM	Cell Cycle, Ligase	date	Jun 22, 2009
title	Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure
authors	J.Wang, B.T.Dye, K.R.Rajashankar, I.Kurinov, B.A.Schulman
compound		source
Molecule: Anaphase-Promoting Complex Subunit Cdc26 Chain: A, C, E, G, I, K Fragment: Cdc26n Synonym: Cell Division Cycle Protein 26 Homolog Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc26, C9orf17 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cell Division Cycle Protein 16 Homolog Chain: B, D, F, H, J, L Fragment: Apc6tpr Synonym: Cdc16hs, Anaphase-Promoting Complex Subunit 6, Apc6, Cyclosome Subunit 6; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc16, Anapc6 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63	R_factor 0.188 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 301.897 301.897 80.168 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MSE	enzyme
note	3HYM is a representative structure
Gene Ontology	Chain Function Process Component A, C, K, I, G, E
Primary reference	Insights into anaphase promoting complex TPR subdomain assembly from a CDC26-APC6 structure., Wang J, Dye BT, Rajashankar KR, Kurinov I, Schulman BA, Nat Struct Mol Biol. 2009 Sep;16(9):987-9. Epub 2009 Aug 9. PMID:19668213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (636 Kb) [Save to disk] Biological Unit Coordinates (3hym.pdb1.gz) 106 Kb Biological Unit Coordinates (3hym.pdb2.gz) 108 Kb Biological Unit Coordinates (3hym.pdb3.gz) 107 Kb Biological Unit Coordinates (3hym.pdb4.gz) 108 Kb Biological Unit Coordinates (3hym.pdb5.gz) 109 Kb Biological Unit Coordinates (3hym.pdb6.gz) 107 Kb Biological Unit Coordinates (3hym.pdb7.gz) 209 Kb Biological Unit Coordinates (3hym.pdb8.gz) 210 Kb Biological Unit Coordinates (3hym.pdb9.gz) 212 Kb LPC: Ligand-Protein Contacts for 3HYM CSU: Contacts of Structural Units for 3HYM Structure Factors (1305 Kb) Retrieve 3HYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HYM from S2C, [Save to disk] Re-refined 3hym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HYM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HYM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hym_L] [3hym_D] [3hym_H] [3hym_E] [3hym_A] [3hym] [3hym_K] [3hym_B] [3hym_J] [3hym_I] [3hym_C] [3hym_G] [3hym_F] SWISS-PROT database: [Q13042] [Q8NHZ8] Domain organization of [CDC16_HUMAN] [CDC26_HUMAN] by SWISSPFAM Domain found in 3HYM: [TPR ] by SMART

Other resources with information on 3HYM

Community annotation for 3HYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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