3I58 Transferase date Jul 03, 2009
title Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) And 2-Hydroxy-7-Methoxy-5-Methyl Naphtho (Na)
authors H.A.Cooke, S.D.Bruner
compound source
Molecule: O-Methyltransferase
Chain: A, B
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Streptomyces Carzinostaticus Subsp. Neocarzinostaticus;
Organism_taxid: 167636
Atcc: 15944
Gene: Ncsb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-30xalic
Expression_system_plasmid: Pbs5002
symmetry Space Group: P 65
R_factor 0.212 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.392 108.392 210.321 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.69 Å
ligand 7NA, GOL, SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular basis of substrate promiscuity for the SAM-dependent O-methyltransferase NcsB1, involved in the biosynthesis of the enediyne antitumor antibiotic neocarzinostatin., Cooke HA, Guenther EL, Luo Y, Shen B, Bruner SD, Biochemistry. 2009 Aug 25. PMID:19702337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3i58.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3I58
  • CSU: Contacts of Structural Units for 3I58
  • Structure Factors (487 Kb)
  • Retrieve 3I58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I58 from S2C, [Save to disk]
  • Re-refined 3i58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I58, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i58] [3i58_A] [3i58_B]
  • SWISS-PROT database: [Q84HC8]
  • Domain organization of [Q84HC8_STRCZ] by SWISSPFAM
  • Other resources with information on 3I58
  • Community annotation for 3I58 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science