3I5N	Transferase	date	Jul 06, 2009
title	Crystal Structure Of C-Met With Triazolopyridazine Inhibitor
authors	S.F.Bellon, D.A.Whittington, A.M.Long, A.A.Boezio
compound		source
Molecule: Hepatocyte Growth Factor Receptor Chain: A Fragment: Kinase Domain (Unp Residues 1048 To 1350) Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Met Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.977 43.241 158.232 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	B2D BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and optimization of potent and selective triazolopyridazine series of c-Met inhibitors., Boezio AA, Berry L, Albrecht BK, Bauer D, Bellon SF, Bode C, Chen A, Choquette D, Dussault I, Hirai S, Kaplan-Lefko P, Larrow JF, Lin MH, Lohman J, Potashman MH, Rex K, Santostefano M, Shah K, Shimanovich R, Springer SK, Teffera Y, Yang Y, Zhang Y, Harmange JC, Bioorg Med Chem Lett. 2009 Nov 15;19(22):6307-12. Epub 2009 Sep 27. PMID:19819693

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3i5n.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3I5N CSU: Contacts of Structural Units for 3I5N Structure Factors (257 Kb) Retrieve 3I5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I5N from S2C, [Save to disk] Re-refined 3i5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3I5N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I5N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i5n_A] [3i5n] SWISS-PROT database: [P08581] Domain organization of [MET_HUMAN] by SWISSPFAM Domain found in 3I5N: [TyrKc ] by SMART

Other resources with information on 3I5N

Community annotation for 3I5N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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