3I9A Hormone date Jul 10, 2009
title Crystal Structure Of Human Transthyretin Variant A25t - #1
authors L.C.Palmieri, J.B.B.Freire, F.L.Palhano, E.P.C.Azevedo, D.Foguel L.M.T.R.Lima
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin, Tbpa, Ttr, Attr
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.080 87.830 66.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3i9a.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3I9A
  • CSU: Contacts of Structural Units for 3I9A
  • Structure Factors (469 Kb)
  • Retrieve 3I9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I9A from S2C, [Save to disk]
  • Re-refined 3i9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I9A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i9a_B] [3i9a_A] [3i9a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3I9A: [TR_THY ] by SMART
  • Other resources with information on 3I9A
  • Community annotation for 3I9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science