3IMY	Nuclear Protein Receptor	date	Aug 11, 2009
title	Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
authors	L.Bleicher, L.Polikarpov, R.Aparicio
compound		source
Molecule: Thyroid Hormone Receptor Beta Chain: A Fragment: Unp Residues 202-461 Synonym: Nuclear Receptor Subfamily 1 Group A Member 2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Erba2, Nr1a2, Thr1, Thrb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 31 2 1	R_factor 0.225 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.996 68.996 130.861 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	B72, CAS BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms., Bleicher L, Aparicio R, Nunes FM, Martinez L, Gomes Dias SM, Figueira AC, Santos MA, Venturelli WH, da Silva R, Donate PM, Neves FA, Simeoni LA, Baxter JD, Webb P, Skaf MS, Polikarpov I, BMC Struct Biol. 2008 Jan 31;8:8. PMID:18237438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3imy.pdb1.gz) 42 Kb Biological Unit Coordinates (3imy.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 3IMY CSU: Contacts of Structural Units for 3IMY Structure Factors (93 Kb) Retrieve 3IMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IMY from S2C, [Save to disk] Re-refined 3imy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IMY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IMY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IMY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3imy_A] [3imy] SWISS-PROT database: [P10828] Domain organization of [THB_HUMAN] by SWISSPFAM Domain found in 3IMY: [HOLI ] by SMART

Other resources with information on 3IMY

Community annotation for 3IMY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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