3ION	Transferase	date	Aug 14, 2009
title	Pdk1 In Complex With Compound 8h
authors	A.M.Olland
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Protein Kinase Domain Residues 48-359 Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32 2 1	R_factor 0.245 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.368 123.368 47.265 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	8H1, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The identification of 8,9-dimethoxy-5-(2-aminoalkoxy-pyridin-3-yl)-benzo[c][2,7]naphthyridin-4-y lamines as potent inhibitors of 3-phosphoinositide-dependent kinase-1 (PDK-1)., Nittoli T, Dushin RG, Ingalls C, Cheung K, Floyd MB, Fraser H, Olland A, Hu Y, Grosu G, Han X, Arndt K, Guo B, Wissner A, Eur J Med Chem. 2009 Dec 28. PMID:20074837

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3ion.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3ION CSU: Contacts of Structural Units for 3ION Structure Factors (245 Kb) Retrieve 3ION in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ION from S2C, [Save to disk] Re-refined 3ion structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ION in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ION

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ION, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ion_A] [3ion] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ION: [S_TKc ] by SMART

Other resources with information on 3ION

Community annotation for 3ION at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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