3IW6 Transferase date Sep 02, 2009
title Human P38 Map Kinase In Complex With A Benzylpiperazin-Pyrro
authors C.Gruetter, J.R.Simard, D.Rauh
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: P38 Map Kinase, Mitogen-Activated Protein Kinase P Map Kinase P38 Alpha, Cytokine Suppressive Anti-Inflammator Binding Protein, Csaid-Binding Protein, Csbp, Max-Interacti 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 6p-1
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.000 68.740 74.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BOG, PP0 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-throughput screening to identify inhibitors which stabilize inactive kinase conformations in p38alpha., Simard JR, Grutter C, Pawar V, Aust B, Wolf A, Rabiller M, Wulfert S, Robubi A, Kluter S, Ottmann C, Rauh D, J Am Chem Soc. 2009 Dec 30;131(51):18478-88. PMID:19950957
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3iw6.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3IW6
  • CSU: Contacts of Structural Units for 3IW6
  • Structure Factors (164 Kb)
  • Retrieve 3IW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IW6 from S2C, [Save to disk]
  • Re-refined 3iw6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IW6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IW6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iw6_A] [3iw6]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3IW6: [S_TKc ] by SMART
  • Other resources with information on 3IW6
  • Community annotation for 3IW6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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