3IXX	Virus	date	Feb 26, 2009
title	The Pseudo-Atomic Structure Of West Nile Immature Virus In C With Fab Fragments Of The Anti-Fusion Loop Antibody E53
authors	M.V.Cherrier, B.Kaufmann, G.E.Nybakken, S.M.Lok, J.T.Warren, C.A. V.A.Kostyuchenko, H.A.Holdaway, P.R.Chipman, R.J.Kuhn, M.S.Diam M.G.Rossmann, D.H.Fremont
compound		source
Molecule: Envelope Protein E Chain: A, B, C Fragment: West Nile Virus Envelope Protein Engineered: Yes		Organism_scientific: West Nile Virus Organism_common: Wnv Organism_taxid: 11082 Strain: Ny99
Molecule: Peptide Pr Chain: D, E, F Fragment: West Nile Virus Pr Peptide Engineered: Yes		Organism_scientific: West Nile Virus Organism_common: Wnv Organism_taxid: 11082 Strain: Ny99
Molecule: E53 Fab Fragment (Chain H) Chain: G, I Fragment: E53 Fab Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
Molecule: E53 Fab Fragment (Chain L) Chain: H, J Fragment: E53 Fab Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	15.00 Å
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural basis for the preferential recognition of immature flaviviruses by a fusion-loop antibody., Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Chen BR, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH, EMBO J. 2009 Oct 21;28(20):3269-76. Epub 2009 Aug 27. PMID:19713934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3ixx.pdb1.gz) 2874 Kb CSU: Contacts of Structural Units for 3IXX Retrieve 3IXX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IXX from S2C, [Save to disk]

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Visual 3D analysis of 3IXX

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IXX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ixx_H] [3ixx_D] [3ixx_I] [3ixx_E] [3ixx_F] [3ixx_A] [3ixx_B] [3ixx_G] [3ixx_C] [3ixx_J] [3ixx] SWISS-PROT database: [A7TZT4] [Q3I100] Domain organization of [A7TZT4_WNV] [Q3I100_WNV] by SWISSPFAM Domains found in 3IXX: [IG_like] [IGv ] by SMART

Other resources with information on 3IXX

Community annotation for 3IXX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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